Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_0897KEGG: bid:Bind_2301 hypothetical protein. (138 aa)    
Predicted Functional Partners:
Msil_0240
KEGG: mag:amb2967 hypothetical protein.
  
     0.741
Msil_0271
SMART: Calcium-binding EF-hand-containing protein; KEGG: mpo:Mpop_1805 putative signal transduction protein with EFhand domain.
  
     0.723
Msil_0241
PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: mag:amb2966 large extracellular alpha-helical protein.
  
     0.714
Msil_2088
KEGG: bid:Bind_2076 membrane protein involved in the export of O-antigen and teichoic acid-like protein.
  
    0.711
Msil_0934
PFAM: glycosyl transferase group 1; KEGG: bid:Bind_0590 glycosyl transferase group 1.
  
     0.703
Msil_1093
PFAM: DNA/RNA non-specific endonuclease; KEGG: bbt:BBta_5484 hypothetical protein; Belongs to the peptidase S1B family.
  
    0.644
Msil_0936
KEGG: bid:Bind_0592 hypothetical protein.
  
     0.633
Msil_1273
PFAM: cytochrome c class I; KEGG: bbt:BBta_0348 putative cytochrome c precursor.
  
     0.600
Msil_0902
KEGG: bid:Bind_1789 hypothetical protein.
  
     0.574
Msil_2316
KEGG: met:M446_2080 hypothetical protein.
  
     0.541
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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