Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_0907PFAM: Sel1 domain protein repeat-containing protein; KEGG: bja:bll6024 hypothetical protein. (190 aa)    
Predicted Functional Partners:
Msil_0908
PFAM: peptidase A24A prepilin type IV; KEGG: rpc:RPC_3012 peptidase A24A, prepilin type IV; Belongs to the peptidase A24 family.
     
 0.781
Msil_0909
TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: xau:Xaut_2106 general secretion pathway protein D; Belongs to the bacterial secretin family.
     
 0.778
Msil_0265
PFAM: Sel1 domain protein repeat-containing protein; KEGG: met:M446_3098 Sel1 domain protein repeat-containing protein.
  
     0.773
Msil_0312
PFAM: Sel1 domain protein repeat-containing protein; KEGG: bid:Bind_3521 Sel1 domain protein repeat-containing protein.
  
     0.773
Msil_3333
PFAM: Sel1 domain protein repeat-containing protein; KEGG: azc:AZC_1154 Sel1 repeat-containing protein.
  
     0.773
Msil_1685
PFAM: Sel1 domain protein repeat-containing protein; KEGG: bid:Bind_1863 Sel1 domain protein repeat-containing protein.
  
     0.736
Msil_1174
FOG: TPR repeat SEL1 subfamily protein-like protein; KEGG: aas:Aasi_0851 hypothetical protein.
  
     0.697
Msil_0025
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: bid:Bind_3655 flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
 
 0.512
Msil_0910
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: bja:bll6021 general secretion pathway protein E.
       0.496
Msil_0912
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: bra:BRADO6346 general secretion pathway protein G.
 
   
 0.411
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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