Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_0915KEGG: nha:Nham_0736 putative general secretion pathway protein J. (254 aa)    
Predicted Functional Partners:
Msil_0916
KEGG: bbt:BBta_2617 putative general secretion pathway protein K.
  
 
 0.926
Msil_0911
PFAM: type II secretion system protein; KEGG: rpc:RPC_3008 type II secretion system protein.
  
  
 0.865
Msil_0910
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: bja:bll6021 general secretion pathway protein E.
  
 
 0.825
Msil_0913
KEGG: nha:Nham_0738 general secretion pathway protein H.
  
  
 0.807
Msil_0912
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: bra:BRADO6346 general secretion pathway protein G.
       0.777
Msil_0914
KEGG: xau:Xaut_2111 general secretion pathway protein I.
       0.773
Msil_1757
KEGG: bra:BRADO1299 putative general secretion pathway protein K.
  
 
 0.717
Msil_0917
PFAM: Fimbrial assembly family protein; KEGG: bja:bll6015 hypothetical protein.
  
  
 0.675
Msil_0918
KEGG: nha:Nham_0733 putative general secretion pathway protein M.
     
 0.622
Msil_0919
Hypothetical protein; KEGG: bra:BRADO6339 putative general secretion pathway protein N, GspN.
     
 0.612
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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