Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_0933PFAM: OsmC family protein; KEGG: mex:Mext_2488 OsmC family protein. (141 aa)    
Predicted Functional Partners:
Msil_2325
PFAM: regulatory protein MarR; KEGG: met:M446_4256 transcriptional regulator, MarR family.
  
 0.924
Msil_0619
PFAM: Ferritin Dps family protein; KEGG: aba:Acid345_3717 ferritin and Dps; Belongs to the Dps family.
  
  
 0.629
Msil_0932
KEGG: mrd:Mrad2831_0322 cupin 2 conserved barrel domain protein.
       0.499
Msil_0941
PFAM: CsbD family protein; KEGG: mrd:Mrad2831_5653 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.478
Msil_0934
PFAM: glycosyl transferase group 1; KEGG: bid:Bind_0590 glycosyl transferase group 1.
  
    0.426
Msil_0656
PFAM: SmpA/OmlA domain protein; KEGG: bid:Bind_3383 SmpA/OmlA domain protein.
   
  
 0.403
Msil_1796
KEGG: bid:Bind_3101 hypothetical protein.
   
  
 0.400
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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