Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_0936KEGG: bid:Bind_0592 hypothetical protein. (305 aa)    
Predicted Functional Partners:
Msil_0937
PFAM: permease YjgP/YjgQ family protein; KEGG: bid:Bind_0593 permease-like protein.
 
     0.942
Msil_2088
KEGG: bid:Bind_2076 membrane protein involved in the export of O-antigen and teichoic acid-like protein.
 
  
 0.814
Msil_2154
KEGG: bid:Bind_3386 hypothetical protein.
  
     0.772
Msil_1304
Hypothetical protein; KEGG: met:M446_0887 patatin.
  
     0.763
Msil_0138
TIGRFAM: TonB family protein; KEGG: bid:Bind_2854 TonB family protein.
  
     0.759
Msil_1316
PFAM: fatty acid hydroxylase; KEGG: bid:Bind_2044 fatty acid hydroxylase.
  
     0.753
Msil_0938
PFAM: regulatory protein LysR; KEGG: bid:Bind_0281 putative transcriptional regulator, ModE family.
       0.752
Msil_0449
KEGG: bid:Bind_1817 hypothetical protein.
  
     0.730
Msil_0934
PFAM: glycosyl transferase group 1; KEGG: bid:Bind_0590 glycosyl transferase group 1.
 
    0.721
Msil_3467
KEGG: bid:Bind_0369 TonB-dependent receptor.
  
     0.717
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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