STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msil_0940PFAM: ABC-2 type transporter; KEGG: bid:Bind_0595 ABC-2 type transporter. (267 aa)    
Predicted Functional Partners:
Msil_0939
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bid:Bind_0594 ABC transporter related.
 
 0.998
Msil_2730
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mrd:Mrad2831_5580 ABC transporter related.
 
 
 0.968
Msil_2719
PFAM: glycosyl transferase family 2; KEGG: mpo:Mpop_0564 glycosyl transferase family 2.
 
  
 0.777
Msil_0941
PFAM: CsbD family protein; KEGG: mrd:Mrad2831_5653 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
  
    0.653
Msil_0093
PFAM: polysaccharide export protein; KEGG: bid:Bind_1033 polysaccharide export protein.
  
  
 0.621
Msil_2714
PFAM: polysaccharide export protein; KEGG: azc:AZC_0035 putative periplasmic protein.
  
  
 0.621
Msil_2721
KEGG: met:M446_4871 capsule polysaccharide export protein-like protein.
  
  
 0.581
Msil_2722
KEGG: met:M446_4871 capsule polysaccharide export protein-like protein.
  
  
 0.581
Msil_2731
PFAM: lipopolysaccharide biosynthesis protein; KEGG: xau:Xaut_3812 capsule polysaccharide export protein-like protein.
  
  
 0.581
Msil_1595
KEGG: bid:Bind_2642 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein.
  
  
 0.556
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.