Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Msil_0949PFAM: major facilitator superfamily MFS_1; KEGG: met:M446_4932 major facilitator superfamily MFS_1. (406 aa)    
Predicted Functional Partners:
Msil_0950
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: bid:Bind_0116 transcriptional regulator, XRE family.
       0.602
Msil_0951
PFAM: metallophosphoesterase; KEGG: bid:Bind_0115 metallophosphoesterase.
 
     0.506
Msil_0952
PFAM: glycosyl transferase group 1; KEGG: bid:Bind_0114 glycosyl transferase group 1.
 
     0.485
Msil_2024
PFAM: protein of unknown function DUF1365; KEGG: mlo:mll8086 hypothetical protein.
  
  
 0.407
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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