Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
Msil_0967KEGG: bid:Bind_2438 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3. (314 aa)    
Predicted Functional Partners:
Msil_0772
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_1398 probable permease of ABC transporter.
 
 0.974
Msil_0768
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bra:BRADO0532 putative sulfonate ABC transporter, permease protein (SsuC/YcbM-like).
 
 0.973
ssuB
ABC transporter related; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
 
 0.969
Msil_2448
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mpo:Mpop_4265 binding-protein-dependent transport systems inner membrane component.
 
 0.969
Msil_2672
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpt:Rpal_2687 binding-protein-dependent transport systems inner membrane component.
 
  0.966
Msil_2671
PFAM: NMT1/THI5 like domain protein; KEGG: bbt:BBta_3303 putative alkanesulfonate ABC transporter, substrate binding protein.
  
  
  0.943
ssuD
Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.
 
 
 0.933
Msil_2673
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bid:Bind_2057 ABC transporter related.
 
 0.930
Msil_0769
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpt:Rpal_2893 ABC transporter related.
 
 0.927
Msil_0767
KEGG: azc:AZC_3163 ABC transporter substrate binding protein; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3.
  
  
 
0.923
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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