Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Msil_0982PFAM: monooxygenase FAD-binding; KEGG: bid:Bind_0923 monooxygenase FAD-binding. (399 aa)    
Predicted Functional Partners:
Msil_0983
KEGG: bid:Bind_0924 hypothetical protein.
 
     0.802
Msil_0387
PFAM: monooxygenase FAD-binding; KEGG: sco:SCO0486 monooxygenase.
  
     0.647
Msil_0981
KEGG: bid:Bind_0670 hypothetical protein.
       0.618
Msil_1380
PFAM: monooxygenase FAD-binding; KEGG: sco:SCO7705 oxidoreductase.
  
     0.585
Msil_2007
TIGRFAM: urea ABC transporter, urea binding protein; PFAM: Extracellular ligand-binding receptor; KEGG: dra:DR_A0320 UreA/short-chain amide ABC transporter, periplasmic UreA/short-chain amide-binding protein.
   
    0.562
Msil_3500
PFAM: amidohydrolase 2; KEGG: rle:pRL120216 putative amidohydrolase.
 
  
 0.558
Msil_2723
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; Methyltransferase type 12; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: bid:Bind_1113 beta-ketoacyl synthase.
 
 
 0.546
Msil_0984
PFAM: glycosyl transferase group 1; KEGG: chu:CHU_0894 A-glycosyltransferase.
  
    0.542
Msil_1463
PFAM: monooxygenase FAD-binding; KEGG: swi:Swit_3045 monooxygenase, FAD-binding.
  
   
 0.498
Msil_1366
PFAM: monooxygenase FAD-binding; KEGG: mxa:MXAN_6265 hypothetical protein.
  
   
 0.464
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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