Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Msil_0984PFAM: glycosyl transferase group 1; KEGG: chu:CHU_0894 A-glycosyltransferase. (403 aa)    
Predicted Functional Partners:
Msil_0983
KEGG: bid:Bind_0924 hypothetical protein.
       0.580
Msil_0982
PFAM: monooxygenase FAD-binding; KEGG: bid:Bind_0923 monooxygenase FAD-binding.
  
    0.542
Msil_0668
PFAM: glycosyl transferase family 2; KEGG: bid:Bind_0591 glycosyl transferase family 2.
 
  
 0.516
Msil_2717
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: azc:AZC_1522 NAD-dependent epimerase.
  
    0.502
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.495
Msil_2322
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bid:Bind_3201 TPR repeat-containing protein.
 
 
 0.456
Msil_0953
PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; KEGG: bid:Bind_0111 2-alkenal reductase.
  
    0.448
Msil_0985
KEGG: amr:AM1_0382 hypothetical protein.
  
    0.445
Msil_0981
KEGG: bid:Bind_0670 hypothetical protein.
       0.437
Msil_2329
KEGG: bid:Bind_0795 nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase.
 
  
 0.424
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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