Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_1005KEGG: bid:Bind_1105 putative transmembrane anti-sigma factor. (307 aa)    
Predicted Functional Partners:
Msil_1004
PFAM: Sigma-70 region 4 type 2; KEGG: bid:Bind_1104 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
 
 0.862
Msil_2088
KEGG: bid:Bind_2076 membrane protein involved in the export of O-antigen and teichoic acid-like protein.
  
     0.565
Msil_0053
KEGG: bid:Bind_3586 hypothetical protein.
  
     0.468
Msil_0854
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: xau:Xaut_2662 ECF subfamily RNA polymerase sigma-24 factor.
 
 
 0.455
Msil_0852
PFAM: Secreted repeat of unknown function; KEGG: rpb:RPB_1064 secreted repeat protein.
 
     0.442
Msil_0030
KEGG: bid:Bind_3650 hypothetical protein.
  
     0.432
Msil_1316
PFAM: fatty acid hydroxylase; KEGG: bid:Bind_2044 fatty acid hydroxylase.
  
     0.431
Msil_1744
PFAM: Secreted repeat of unknown function; KEGG: mrd:Mrad2831_5259 secreted repeat of unknown function.
 
     0.429
Msil_0038
KEGG: bja:bll6861 chemotaxis protein.
  
     0.421
Msil_0054
KEGG: bid:Bind_3585 hypothetical protein.
  
     0.421
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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