Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Msil_1053PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bid:Bind_1783 ErfK/YbiS/YcfS/YnhG family protein. (195 aa)    
Predicted Functional Partners:
Msil_0750
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Sporulation domain protein; KEGG: bid:Bind_1670 serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 0.610
Msil_0928
PFAM: beta-lactamase; KEGG: spe:Spro_0636 beta-lactamase/D-alanine carboxypeptidase.
     
  0.500
Msil_1236
PFAM: Invasion associated locus B family protein; KEGG: bid:Bind_0731 invasion associated locus B family protein.
  
     0.447
Msil_3518
PFAM: conserved hypothetical protein; KEGG: bid:Bind_2411 hypothetical protein.
  
     0.411
Msil_0166
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bid:Bind_2917 protein of unknown function DUF949.
 
  
 0.404
Msil_1052
PFAM: protein of unknown function DUF1467; KEGG: bid:Bind_1782 protein of unknown function DUF1467.
       0.401
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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