Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_1069PFAM: Transglycosylase-associated protein; KEGG: bid:Bind_0892 hypothetical protein. (96 aa)    
Predicted Functional Partners:
Msil_3037
TIGRFAM: methyltransferase; KEGG: met:M446_2254 hypothetical protein.
   
    0.579
Msil_0941
PFAM: CsbD family protein; KEGG: mrd:Mrad2831_5653 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
 
  
 0.510
Msil_1068
PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rpc:RPC_2065 3-hydroxyisobutyrate dehydrogenase.
  
    0.482
Msil_1843
KEGG: atc:AGR_L_1520 hypothetical protein.
 
     0.421
Msil_1361
SMART: nuclease (SNase domain protein); KEGG: bid:Bind_3161 nuclease (SNase domain protein).
 
     0.417
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.