Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Msil_1100TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: bid:Bind_0712 folate-binding protein YgfZ; Belongs to the GcvT family. (279 aa)    
Predicted Functional Partners:
Msil_1102
KEGG: bid:Bind_1174 metal dependent phosphohydrolase, HD region.
  
    0.828
Msil_1101
KEGG: bid:Bind_1176 DNA-3-methyladenine glycosylase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase.
       0.821
Msil_0493
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: bid:Bind_2712 iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
 
 
 0.751
Msil_2209
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: bid:Bind_0103 iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
 
 
 0.743
Msil_3622
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: azc:AZC_3409 iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
 
 
 0.723
Msil_3644
PFAM: HesB/YadR/YfhF-family protein; KEGG: pna:Pnap_1576 iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
 
 
 0.697
Msil_1099
KEGG: bid:Bind_0713 dihydroorotase, multifunctional complex type; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase.
       0.652
Msil_1103
KEGG: bid:Bind_1173 hypothetical protein.
       0.623
Msil_3024
uroporphyrin-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.
  
  
 0.623
Msil_3541
PFAM: phospholipid/glycerol acyltransferase; KEGG: bid:Bind_3562 phospholipid/glycerol acyltransferase.
  
     0.585
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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