Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Msil_1107KEGG: mma:MM_1983 hypothetical protein. (694 aa)    
Predicted Functional Partners:
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.933
bamD
Outer membrane assembly lipoprotein YfiO; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.910
Msil_2350
PFAM: peptidylprolyl isomerase FKBP-type; KEGG: rpe:RPE_2711 peptidylprolyl isomerase.
   
 
 0.781
Msil_1108
Hypothetical protein.
       0.773
Msil_2843
PFAM: E1-E2 ATPase-associated domain protein; KEGG: bid:Bind_1691 E1-E2 ATPase-associated domain protein.
  
     0.568
Msil_1350
KEGG: bpl:BURPS1106A_A2411 hypothetical protein.
  
     0.566
Msil_0656
PFAM: SmpA/OmlA domain protein; KEGG: bid:Bind_3383 SmpA/OmlA domain protein.
    
 
 0.541
Msil_3836
KEGG: bid:Bind_0296 membrane-associated zinc metalloprotease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein.
   
    0.466
hisS
histidyl-tRNA synthetase; KEGG: bid:Bind_1776 histidine--tRNA ligase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein.
  
    0.433
Msil_1659
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
      
 0.431
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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