Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_1127PFAM: NLP/P60 protein; KEGG: bid:Bind_3041 NLP/P60 protein. (286 aa)    
Predicted Functional Partners:
Msil_1126
PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: bid:Bind_3040 leucyl aminopeptidase; Belongs to the peptidase M17 family.
       0.797
Msil_0643
KEGG: bid:Bind_2931 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; Belongs to the peptidase S41A family.
    
 
 0.728
Msil_2517
KEGG: bid:Bind_0363 protein of unknown function DUF214.
   
 
 0.643
Msil_3815
KEGG: bid:Bind_0051 hypothetical protein.
 
  
 0.604
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.547
Msil_1017
PFAM: 2-deoxycytidine 5-triphosphate deaminase; KEGG: bid:Bind_1037 2-deoxycytidine 5-triphosphate deaminase.
  
    0.521
Msil_2230
TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region; KEGG: bid:Bind_2192 hemimethylated DNA binding protein.
  
   
 0.517
Msil_0357
KEGG: bid:Bind_1575 nitrogen-fixing NifU domain protein.
  
     0.503
Msil_0366
PFAM: protein of unknown function DUF1491; KEGG: bid:Bind_1656 protein of unknown function DUF1491.
  
     0.489
Msil_1114
KEGG: xau:Xaut_1374 hypothetical protein.
 
     0.481
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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