Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_1192PFAM: phosphoribulokinase/uridine kinase; KEGG: rpt:Rpal_5125 phosphoribulokinase. (304 aa)    
Predicted Functional Partners:
Msil_1196
PFAM: ribulose bisphosphate carboxylase small chain; KEGG: rpc:RPC_1328 ribulose-bisphosphate carboxylase.
 
 
 0.989
cbbL
Ribulose-bisphosphate carboxylase; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
 
 
 0.987
Msil_1198
PFAM: ribulose-phosphate 3-epimerase; KEGG: bid:Bind_1024 ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 
 0.961
rpiA
Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
     
 0.914
Msil_1193
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
  
 0.867
Msil_1244
KEGG: rru:Rru_A1998 ribulose 1,5-bisphosphate carboxylase large subunit.
 
 
 0.760
fbp
PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: rpc:RPC_2899 fructose-1,6-bisphosphatase.
 
  
 0.756
Msil_1194
Fructose-bisphosphate aldolase, class II, Calvin cycle subtype; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.
 
  
 0.753
Msil_1197
KEGG: rpt:Rpal_1749 CbbX protein; TIGRFAM: CbbX protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase.
 
  
 0.733
Msil_1190
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: met:M446_2283 transcriptional regulator, LysR family.
 
   
 0.671
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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