Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_1383KEGG: bid:Bind_3144 hypothetical protein. (169 aa)    
Predicted Functional Partners:
Msil_0644
PFAM: Peptidase M23; KEGG: bid:Bind_2932 peptidase M23.
   
   0.712
Msil_1418
PFAM: transcriptional regulator domain protein; KEGG: met:M446_5608 transcriptional regulator, CadC.
   
 
 0.699
argG
PFAM: argininosuccinate synthase; KEGG: bid:Bind_1273 argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
       0.565
Msil_2322
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bid:Bind_3201 TPR repeat-containing protein.
   
 
 0.529
Msil_0643
KEGG: bid:Bind_2931 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; Belongs to the peptidase S41A family.
  
 
 0.524
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.446
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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