Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Msil_1487PFAM: Conjugal transfer protein; KEGG: cak:Caul_3834 conjugal transfer protein. (226 aa)    
Predicted Functional Partners:
Msil_1488
KEGG: mlo:mll9606 conjugal transfer protein; TrbL.
 
  
 0.995
Msil_1485
PFAM: conjugation TrbI family protein; KEGG: bja:bll8279 conjugal transfer protein.
 
  
 0.983
Msil_2200
KEGG: bbt:BBta_6607 putative DNA primase.
  
     0.723
Msil_1970
PFAM: TRAG family protein; KEGG: nha:Nham_0593 TraG protein.
 
     0.701
Msil_1960
PFAM: domain of unknown function DUF1738; KEGG: mes:Meso_3793 domain of unknown function DUF1738.
 
    0.517
Msil_1976
PFAM: Domain of unknown function DUF1814; KEGG: mes:Meso_4611 hypothetical protein.
 
     0.504
Msil_1975
KEGG: mes:Meso_4610 hypothetical protein.
 
     0.490
Msil_1489
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: smd:Smed_6518 IstB domain protein ATP-binding protein.
       0.432
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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