STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msil_1556KEGG: ade:Adeh_2325 hypothetical protein. (125 aa)    
Predicted Functional Partners:
Msil_1551
KEGG: rde:RD1_4054 type I restriction-mod.
       0.612
Msil_1553
PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases; KEGG: lpc:LPC_2788 putative type I restriction enzyme R protein.
       0.612
Msil_1550
PFAM: N-6 DNA methylase; KEGG: lpc:LPC_2790 putative type I restriction enzyme HindVIIP M protein.
       0.605
Msil_1552
KEGG: ccr:CC_0622 hypothetical protein.
       0.605
Msil_1554
KEGG: pvi:Cvib_0624 hypothetical protein.
       0.605
Msil_1555
KEGG: pvi:Cvib_0625 hypothetical protein.
       0.605
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.