Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
Msil_1672PFAM: Fe-S metabolism associated SufE; KEGG: bid:Bind_1641 Fe-S metabolism associated SufE. (142 aa)    
Predicted Functional Partners:
Msil_0488
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.979
Msil_1608
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: bid:Bind_0098 FeS assembly protein SufB.
 
 
 0.862
Msil_1606
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: bid:Bind_0100 FeS assembly protein SufD.
 
 
 0.851
Msil_1607
KEGG: bid:Bind_0099 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.836
Msil_3647
KEGG: rpb:RPB_0955 hypothetical protein.
  
 
 0.805
Msil_1671
KEGG: azc:AZC_1092 hypothetical protein.
       0.518
Msil_1604
PFAM: protein of unknown function DUF59; KEGG: bid:Bind_0102 protein of unknown function DUF59.
 
   
 0.475
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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