Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Msil_1689KEGG: bid:Bind_1724 hypothetical protein. (154 aa)    
Predicted Functional Partners:
Msil_3548
PFAM: Apolipoprotein A1/A4/E; KEGG: mrd:Mrad2831_1948 hypothetical protein.
  
     0.614
Msil_1006
KEGG: bja:bll7051 hypothetical protein.
  
     0.598
Msil_0073
KEGG: bid:Bind_0917 hypothetical protein.
  
     0.570
Msil_1362
PFAM: peptidase M48 Ste24p; KEGG: bid:Bind_3160 peptidase M48 Ste24p.
  
     0.570
Msil_1857
KEGG: bid:Bind_3592 hypothetical protein.
  
     0.553
Msil_0655
KEGG: bid:Bind_3382 ubiquinol-cytochrome c chaperone.
  
     0.548
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
       0.546
Msil_0121
KEGG: bid:Bind_0880 hypothetical protein.
  
     0.545
Msil_1690
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: bid:Bind_1725 type I secretion outer membrane protein, TolC family.
 
     0.544
Msil_0187
KEGG: bid:Bind_1951 hypothetical protein.
  
     0.519
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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