Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_1697TIGRFAM: acid phosphatase; PFAM: phosphoesterase; KEGG: bid:Bind_1612 acid phosphatase. (520 aa)    
Predicted Functional Partners:
Msil_1696
PFAM: Di-haem cytochrome c peroxidase; KEGG: bid:Bind_1613 di-haem cytochrome c peroxidase.
 
     0.877
Msil_0389
KEGG: mrd:Mrad2831_1422 putative transmembrane anti-sigma factor.
  
     0.696
Msil_1770
PFAM: regulatory protein TetR; KEGG: bid:Bind_2179 transcriptional regulator, TetR family.
  
     0.469
Msil_3221
PFAM: CDP-diacylglycerol pyrophosphatase; KEGG: mrd:Mrad2831_5996 CDP-diacylglycerol diphosphatase.
  
     0.465
Msil_2410
PFAM: natural resistance-associated macrophage protein; KEGG: nar:Saro_0697 natural resistance-associated macrophage protein.
  
   
 0.447
Msil_2114
PFAM: Acetoacetate decarboxylase; KEGG: bja:bll7763 acetoacetate decarboxylase.
  
     0.434
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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