Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_1772Nitroreductase; KEGG: mag:amb0269 nitroreductase. (536 aa)    
Predicted Functional Partners:
Msil_1771
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: azc:AZC_3408 ATPase.
 
     0.904
Msil_1764
TIGRFAM: nitrogenase-associated protein; PFAM: arsenate reductase and related; KEGG: bid:Bind_0471 nitrogenase-associated protein; Belongs to the ArsC family.
   
 0.832
Msil_1248
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: npu:Npun_R6591 amino acid adenylation domain-containing protein.
   
 
 0.765
Msil_1094
PFAM: protein of unknown function DUF239; KEGG: lbc:LACBIDRAFT_307948 hypothetical protein Pfam: DUF239.
  
     0.706
Msil_1765
KEGG: bbt:BBta_5892 hypothetical protein.
  
    0.653
Msil_2550
SMART: Thaumatin pathogenesis-related protein; KEGG: osa:4352858 hypothetical protein.
  
     0.619
Msil_3638
KEGG: rpc:RPC_4465 hypothetical protein.
  
     0.562
Msil_3643
KEGG: rpc:RPC_4469 tetratricopeptide TPR_2.
  
     0.560
Msil_1740
PFAM: Glutathione S-transferase domain; KEGG: mca:MCA1303 glutathione S-transferase.
  
     0.556
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
 
   0.525
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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