Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_1827PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pzu:PHZ_p0136 alcohol dehydrogenase, zinc-binding. (345 aa)    
Predicted Functional Partners:
Msil_1650
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bid:Bind_3396 oxidoreductase FAD/NAD(P)-binding domain protein.
  
  
  0.911
Msil_1648
PFAM: monooxygenase component MmoB/DmpM; KEGG: bid:Bind_3394 phenol 2-monooxygenase.
     
  0.900
Msil_1649
PFAM: methane/phenol/toluene hydroxylase; KEGG: bid:Bind_3395 methane/phenol/toluene hydroxylase.
     
  0.900
Msil_1651
PFAM: methane/phenol/toluene hydroxylase; KEGG: bid:Bind_3397 methane monooxygenase.
     
  0.900
Msil_2114
PFAM: Acetoacetate decarboxylase; KEGG: bja:bll7763 acetoacetate decarboxylase.
     
  0.900
Msil_2987
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: pzu:PHZ_p0134 pyruvate:ferredoxin oxidoreductase.
     
 0.632
Msil_2723
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; Methyltransferase type 12; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: bid:Bind_1113 beta-ketoacyl synthase.
  
  
 0.604
Msil_1828
PFAM: Luciferase-like monooxygenase; KEGG: bid:Bind_3549 luciferase-like monooxygenase.
 
   
 0.603
Msil_2638
TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: mpo:Mpop_1579 sarcosine oxidase, alpha subunit family; Belongs to the GcvT family.
  
  
 0.545
Msil_1825
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: pzu:PHZ_c2804 response regulator.
       0.474
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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