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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msil_1908KEGG: bid:Bind_0824 hypothetical protein. (345 aa)    
Predicted Functional Partners:
Msil_0319
PFAM: heat shock protein DnaJ domain protein; KEGG: bid:Bind_3428 heat shock protein DnaJ domain protein.
  
     0.645
Msil_2296
PFAM: protein of unknown function DUF448; KEGG: bid:Bind_1048 protein of unknown function DUF448.
  
     0.631
Msil_0833
PFAM: GcrA cell cycle regulator; KEGG: bid:Bind_3667 GcrA cell cycle regulator.
  
     0.610
atpF
H+transporting two-sector ATPase B/B' subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.575
Msil_0329
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
     0.546
Msil_1116
PFAM: cell wall hydrolase SleB; KEGG: bid:Bind_0856 cell wall hydrolase SleB.
  
     0.521
Msil_0496
PFAM: Sporulation domain protein; KEGG: bid:Bind_2709 sporulation domain protein.
  
     0.504
Msil_2280
Protein of unknown function DUF710; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.
  
     0.504
Msil_0599
PFAM: protein of unknown function DUF1321; KEGG: bid:Bind_0771 protein of unknown function DUF1321.
  
     0.461
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.452
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.