Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_1993PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rle:RL0659 hypothetical protein. (370 aa)    
Predicted Functional Partners:
Msil_1994
PFAM: GCN5-related N-acetyltransferase; KEGG: azc:AZC_0070 putative histone acetyltransferase.
 
   
 0.960
Msil_1992
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: azc:AZC_0072 putative amidohydrolase.
 
     0.957
Msil_1995
PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: azc:AZC_0069 putative selenophosphate synthetase-related protein.
 
     0.957
Msil_1997
KEGG: amr:AM1_2238 hypothetical protein.
 
     0.957
Msil_1998
KEGG: azc:AZC_0066 putative flavoprotein involved in K+ transport.
 
     0.957
Msil_1999
KEGG: azc:AZC_0065 hypothetical protein.
 
     0.946
Msil_1996
PFAM: glycosyl transferase group 1; KEGG: azc:AZC_0068 glycosyltransferase.
 
     0.942
Msil_1991
KEGG: azc:AZC_0073 hypothetical protein.
 
   
 0.940
Msil_1990
Transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: azc:AZC_0074 putative transcriptional regulator.
 
     0.759
Msil_3458
KEGG: rle:pRL110126 putative transmembrane protein.
  
     0.400
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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