Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_2000KEGG: bid:Bind_0983 hypothetical protein. (418 aa)    
Predicted Functional Partners:
Msil_1316
PFAM: fatty acid hydroxylase; KEGG: bid:Bind_2044 fatty acid hydroxylase.
  
     0.755
Msil_1304
Hypothetical protein; KEGG: met:M446_0887 patatin.
  
     0.698
Msil_2343
KEGG: bid:Bind_3661 hypothetical protein.
  
   0.684
Msil_3058
KEGG: bid:Bind_2724 conserved hypothetical protein, putative phage associated protein.
  
     0.673
Msil_1652
KEGG: bid:Bind_3661 hypothetical protein.
  
   0.660
Msil_2154
KEGG: bid:Bind_3386 hypothetical protein.
  
     0.656
Msil_3055
KEGG: bid:Bind_2727 conserved hypothetical protein, putative phage associated protein.
  
     0.633
Msil_2665
PFAM: Polypeptide-transport-associated domain protein ShlB-type; KEGG: nha:Nham_0727 hemolysin activation/secretion protein-like.
  
    0.602
Msil_3415
KEGG: bid:Bind_1995 hypothetical protein.
  
   0.591
Msil_2378
KEGG: bja:blr3607 hypothetical protein.
  
     0.577
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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