Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_2045KEGG: met:M446_3715 transcriptional regulator, fis family; TIGRFAM: transcriptional regulator PpsR; PFAM: helix-turn-helix Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein. (480 aa)    
Predicted Functional Partners:
Msil_2044
PFAM: cobalamin B12-binding domain protein; KEGG: met:M446_3716 cobalamin B12-binding domain protein.
 
   
 0.941
Msil_2043
PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: mpo:Mpop_5362 2-vinyl bacteriochlorophyllide hydratase.
 
   
 0.873
Msil_2036
TIGRFAM: photosynthetic reaction center H subunit; PFAM: PRC-barrel domain protein; Photosynthetic reaction centre H subunit; KEGG: bbt:BBta_6411 reaction center protein H chain (photosynthetic reaction center H subunit).
 
   
 0.862
Msil_2038
TIGRFAM: magnesium protoporphyrin O-methyltransferase; PFAM: Magnesium-protoporphyrin IX methyltransferase domain protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: rru:Rru_A0619 Mg-protoporphyrin IX methyl transferase.
 
     0.853
bchB
Light-independent protochlorophyllide reductase, B subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
 
     0.853
Msil_2034
TIGRFAM: photosynthetic complex assembly protein; KEGG: rpc:RPC_1321 putative photosynthetic complex assembly protein.
 
     0.851
Msil_2035
KEGG: rru:Rru_A0616 photosynthetic complex assembly protein.
 
     0.851
Msil_2037
PFAM: PUCC protein; major facilitator superfamily MFS_1; KEGG: mex:Mext_4811 PucC protein.
 
     0.846
bchN
Light-independent protochlorophyllide reductase, N subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
 
     0.842
Msil_2031
TIGRFAM: photosynthetic complex assembly protein 2; KEGG: rru:Rru_A0614 hypothetical protein.
 
     0.837
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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