Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Msil_2103PFAM: protein of unknown function DUF461; KEGG: mlo:mll3326 hypothetical protein. (165 aa)    
Predicted Functional Partners:
Msil_3801
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.854
Msil_3800
Cytochrome b/b6 domain protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.838
Msil_0468
PFAM: copper resistance protein CopC; KEGG: bbt:BBta_p0115 copper resistance protein C.
  
  
 0.816
Msil_3379
TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; KEGG: bpy:Bphyt_2026 cytochrome c oxidase, subunit II.
  
 
 0.742
Msil_1237
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.733
Msil_1242
PFAM: cytochrome c oxidase subunit III; KEGG: bid:Bind_0725 cytochrome c oxidase subunit III.
  
   0.631
Msil_1513
PFAM: cytochrome c oxidase subunit III; KEGG: pde:Pden_2480 cytochrome c oxidase, subunit III.
  
   0.631
Msil_3381
PFAM: cytochrome c oxidase subunit III; KEGG: bpd:BURPS668_0770 cytochrome c oxidase, subunit I/subunit III.
  
   0.631
Msil_1809
Dyp-type peroxidase family; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
  
  
 0.618
Msil_3310
TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: bac:BamMC406_6414 Dyp-type peroxidase family.
  
  
 0.618
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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