Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_2113PFAM: regulatory protein MarR; KEGG: bid:Bind_0883 transcriptional regulator, MarR family. (170 aa)    
Predicted Functional Partners:
Msil_1558
PFAM: HemY domain protein; KEGG: bid:Bind_1190 HemY domain protein.
  
     0.665
Msil_1428
KEGG: azc:AZC_3150 hypothetical protein.
  
     0.594
Msil_0043
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; KEGG: bid:Bind_3556 flagellar hook-associated protein FlgK.
  
    0.575
Msil_1010
PFAM: protein of unknown function DUF1465; KEGG: bid:Bind_3249 protein of unknown function DUF1465.
  
     0.555
Msil_0366
PFAM: protein of unknown function DUF1491; KEGG: bid:Bind_1656 protein of unknown function DUF1491.
  
     0.545
flgH
Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
  
    0.543
Msil_1017
PFAM: 2-deoxycytidine 5-triphosphate deaminase; KEGG: bid:Bind_1037 2-deoxycytidine 5-triphosphate deaminase.
  
     0.540
Msil_0424
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: rpe:RPE_3385 response regulator PleD.
  
  
 0.531
Msil_1361
SMART: nuclease (SNase domain protein); KEGG: bid:Bind_3161 nuclease (SNase domain protein).
  
   
 0.525
Msil_1000
PFAM: protein of unknown function DUF88; KEGG: bid:Bind_2447 protein of unknown function DUF88.
  
     0.491
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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