Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_2120PFAM: RDD domain containing protein; KEGG: bid:Bind_1205 RDD domain containing protein. (157 aa)    
Predicted Functional Partners:
Msil_1218
KEGG: bid:Bind_0732 hypothetical protein.
  
     0.740
Msil_3548
PFAM: Apolipoprotein A1/A4/E; KEGG: mrd:Mrad2831_1948 hypothetical protein.
 
     0.716
Msil_0921
KEGG: bid:Bind_0271 TolA protein.
  
     0.698
Msil_0496
PFAM: Sporulation domain protein; KEGG: bid:Bind_2709 sporulation domain protein.
 
     0.697
Msil_0983
KEGG: bid:Bind_0924 hypothetical protein.
  
   
 0.692
Msil_2528
KEGG: bid:Bind_0268 hypothetical protein.
  
     0.681
Msil_0448
KEGG: bid:Bind_1816 hypothetical protein.
  
     0.674
Msil_0151
PFAM: protein of unknown function DUF540; KEGG: bid:Bind_1307 protein of unknown function DUF540.
  
     0.651
Msil_1941
PFAM: protein of unknown function DUF465; KEGG: bid:Bind_0443 protein of unknown function DUF465.
  
     0.649
Msil_0957
PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: bid:Bind_0872 transglutaminase family protein cysteine peptidase BTLCP.
  
     0.648
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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