Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_2135PFAM: protein of unknown function DUF1348; KEGG: smt:Smal_2002 protein of unknown function DUF1348. (157 aa)    
Predicted Functional Partners:
Msil_2134
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: mex:Mext_3102 regulatory protein TetR.
 
     0.848
Msil_2565
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mlo:mll3525 hypothetical protein.
 
     0.695
Msil_2566
Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
     0.625
Msil_2136
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sew:SeSA_A2400 inner membrane ABC transporter permease protein YehW.
       0.499
Msil_2137
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cvi:CV_4394 ABC transporter ATP-binding protein.
       0.499
Msil_2138
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_2944 binding-protein-dependent transport systems inner membrane component.
       0.499
Msil_2139
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: csa:Csal_2943 substrate-binding region of ABC-type glycine betaine transport system.
       0.499
Msil_2140
KEGG: bid:Bind_3505 conserved hypothetical protein; putative deoxyribonuclease.
       0.499
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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