Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_2136PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sew:SeSA_A2400 inner membrane ABC transporter permease protein YehW. (248 aa)    
Predicted Functional Partners:
Msil_2139
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: csa:Csal_2943 substrate-binding region of ABC-type glycine betaine transport system.
 
 0.999
Msil_2137
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cvi:CV_4394 ABC transporter ATP-binding protein.
 
 0.998
Msil_2138
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_2944 binding-protein-dependent transport systems inner membrane component.
 
  
 
0.985
Msil_2140
KEGG: bid:Bind_3505 conserved hypothetical protein; putative deoxyribonuclease.
       0.776
Msil_2141
KEGG: scl:sce1235 hypothetical protein.
       0.525
Msil_2134
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: mex:Mext_3102 regulatory protein TetR.
       0.499
Msil_2135
PFAM: protein of unknown function DUF1348; KEGG: smt:Smal_2002 protein of unknown function DUF1348.
       0.499
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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