Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Msil_2149PFAM: alpha/beta hydrolase fold; PHB de-polymerase domain protein; KEGG: bvi:Bcep1808_7272 PHB de-polymerase domain-containing protein. (381 aa)    
Predicted Functional Partners:
Msil_2995
TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: bid:Bind_0428 polyhydroxyalkonate synthesis repressor, PhaR.
 
   
 0.583
Msil_0810
PFAM: Patatin; KEGG: bid:Bind_3008 patatin.
  
     0.524
Msil_0858
PFAM: Patatin; KEGG: bid:Bind_1856 patatin.
  
     0.509
Msil_1045
PFAM: Patatin; KEGG: azc:AZC_1304 putative esterase.
  
     0.457
Msil_2147
Hypothetical protein.
       0.409
Msil_2148
Hypothetical protein.
       0.409
Msil_2997
TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bid:Bind_0426 acetoacetyl-CoA reductase.
  
   
 0.401
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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