Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_2162KEGG: bid:Bind_1028 hypothetical protein. (154 aa)    
Predicted Functional Partners:
Msil_2163
PFAM: FAD linked oxidase domain protein; KEGG: bid:Bind_1027 FAD linked oxidase domain protein.
 
     0.952
Msil_2161
PFAM: UbiA prenyltransferase; KEGG: bid:Bind_1029 UbiA prenyltransferase; Belongs to the UbiA prenyltransferase family.
 
     0.946
Msil_2164
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bid:Bind_1026 short-chain dehydrogenase/reductase SDR.
 
     0.934
Msil_2165
KEGG: bid:Bind_1709 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase.
       0.487
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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