Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_2182PFAM: protein of unknown function DUF1275; KEGG: rpt:Rpal_1526 bicupin, oxalate decarboxylase family. (224 aa)    
Predicted Functional Partners:
Msil_3736
KEGG: xau:Xaut_4178 hypothetical protein.
  
     0.679
Msil_3458
KEGG: rle:pRL110126 putative transmembrane protein.
  
     0.626
Msil_1277
PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: xau:Xaut_3341 multicopper oxidase type 2.
  
     0.536
Msil_0053
KEGG: bid:Bind_3586 hypothetical protein.
  
     0.533
Msil_1999
KEGG: azc:AZC_0065 hypothetical protein.
  
     0.491
Msil_0235
KEGG: bpy:Bphyt_4736 hypothetical protein.
  
     0.486
Msil_2707
KEGG: xau:Xaut_2306 hypothetical protein.
  
     0.454
Msil_1171
KEGG: xau:Xaut_2306 hypothetical protein.
  
     0.434
Msil_2183
KEGG: rpt:Rpal_1526 bicupin, oxalate decarboxylase family; TIGRFAM: bicupin, oxalate decarboxylase family; PFAM: Cupin domain protein; Cupin 2 conserved barrel domain protein.
     
 0.417
Msil_1210
PFAM: Invasion associated locus B family protein; KEGG: met:M446_0304 putative invasion protein B.
  
     0.410
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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