Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
Msil_2201Hypothetical protein; KEGG: fre:Franean1_5538 DNA binding domain-containing protein. (62 aa)    
Predicted Functional Partners:
Msil_2202
Putative transcriptional regulator, MerR family.
       0.594
Msil_2199
TIGRFAM: phage/plasmid primase, P4 family; PFAM: primase P4; KEGG: swi:Swit_2196 phage/plasmid primase, P4 family.
       0.511
Msil_2200
KEGG: bbt:BBta_6607 putative DNA primase.
       0.511
Msil_2203
PFAM: integrase family protein; KEGG: met:M446_3983 integrase family protein; Belongs to the 'phage' integrase family.
       0.434
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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