Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_2371PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: bja:blr3608 hypothetical protein. (561 aa)    
Predicted Functional Partners:
Msil_2372
PFAM: OmpA/MotB domain protein; KEGG: rle:pRL110591 putative outer membrane protein.
 
     0.829
Msil_2378
KEGG: bja:blr3607 hypothetical protein.
 
     0.793
Msil_2374
KEGG: bja:bll3605 hypothetical protein.
 
     0.702
Msil_2370
KEGG: rle:pRL110589 putative exported protease/peptidase.
       0.664
Msil_0077
KEGG: bid:Bind_2061 putative membrane transporter.
  
     0.638
Msil_3040
Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: mes:Meso_1193 putative phage repressor.
  
     0.621
Msil_0229
KEGG: mpo:Mpop_0840 conserved hypothetical protein; putative signal peptide.
  
     0.599
Msil_2369
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rrs:RoseRS_1668 methyltransferase type 12.
 
     0.551
Msil_2382
PFAM: TPR repeat-containing protein; peptidase C14 caspase catalytic subunit p20; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: met:M446_6666 peptidase C14 caspase catalytic subunit P20.
 
     0.541
Msil_2797
KEGG: met:M446_1545 TRAP-type uncharacterized transport system periplasmic component-like protein.
  
     0.530
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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