STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msil_2530KEGG: bid:Bind_1019 hypothetical protein. (227 aa)    
Predicted Functional Partners:
Msil_1234
PFAM: response regulator receiver; KEGG: mpo:Mpop_3474 response regulator receiver protein.
  
 0.968
Msil_3527
KEGG: bid:Bind_1983 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein.
  
 0.966
Msil_2529
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bid:Bind_0344 two component transcriptional regulator, winged helix family.
  
 0.954
Msil_0667
Multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: bid:Bind_0588 histidine kinase.
  
 
 0.777
Msil_1620
PFAM: conserved hypothetical protein; KEGG: bid:Bind_1021 hypothetical protein.
 
     0.768
Msil_1937
PFAM: protein of unknown function DUF1153; KEGG: bid:Bind_3038 protein of unknown function DUF1153.
  
    0.762
Msil_0073
KEGG: bid:Bind_0917 hypothetical protein.
  
     0.747
Msil_2528
KEGG: bid:Bind_0268 hypothetical protein.
  
     0.708
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.700
Msil_1010
PFAM: protein of unknown function DUF1465; KEGG: bid:Bind_3249 protein of unknown function DUF1465.
  
     0.688
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.