Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_2602PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_4398 putative ABC-type nitrate/sulfonate/bicarbonate transport permease. (272 aa)    
Predicted Functional Partners:
Msil_2603
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_4534 ABC transporter related.
 
 
 0.970
Msil_2601
TIGRFAM: ABC transporter periplasmic binding protein, urea carboxylase region; KEGG: azc:AZC_4397 putative taurine transport system protein.
 
 
 0.969
Msil_2604
TIGRFAM: urea carboxylase-associated protein 2; KEGG: rpe:RPE_1217 hypothetical protein.
 
   
 0.878
Msil_2606
TIGRFAM: urea amidolyase related protein; urea carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: rpa:RPA1405 putative UreA amidolyase.
 
     0.867
Msil_2605
TIGRFAM: urea carboxylase-associated protein 1; KEGG: xau:Xaut_1223 hypothetical protein.
 
     0.857
Msil_2607
TIGRFAM: allophanate hydrolase; PFAM: Amidase; KEGG: met:M446_3691 allophanate hydrolase.
 
     0.839
Msil_2834
KEGG: rpb:RPB_0308 twin-arginine translocation pathway signal.
 
   0.719
Msil_2673
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bid:Bind_2057 ABC transporter related.
 
 
 0.651
Msil_0769
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpt:Rpal_2893 ABC transporter related.
 
 
 0.649
Msil_0967
KEGG: bid:Bind_2438 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3.
 
 
 0.642
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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