Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_2672PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpt:Rpal_2687 binding-protein-dependent transport systems inner membrane component. (346 aa)    
Predicted Functional Partners:
Msil_2671
PFAM: NMT1/THI5 like domain protein; KEGG: bbt:BBta_3303 putative alkanesulfonate ABC transporter, substrate binding protein.
 
  0.993
Msil_2673
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bid:Bind_2057 ABC transporter related.
 
 0.993
Msil_0967
KEGG: bid:Bind_2438 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3.
 
  0.966
Msil_3278
TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: bbt:BBta_3178 ABC transporter substrate-binding protein.
 
  0.966
Msil_0774
KEGG: xau:Xaut_1211 aliphatic sulfonate ABC transporter periplasmic ligand-binding protein; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3.
 
  0.965
Msil_0769
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpt:Rpal_2893 ABC transporter related.
 
 0.964
ssuB
ABC transporter related; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
 
 0.959
Msil_0767
KEGG: azc:AZC_3163 ABC transporter substrate binding protein; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3.
 
  0.957
Msil_2449
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpo:Mpop_4264 ABC transporter related.
 
 0.938
Msil_2447
KEGG: csa:Csal_0183 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein.
 
 0.907
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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