Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_2687PFAM: Flp/Fap pilin component; KEGG: bbt:BBta_1527 putative Flp/Fap pilin component. (61 aa)    
Predicted Functional Partners:
Msil_2690
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: bbt:BBta_1513 hypothetical protein.
 
  
 0.925
Msil_2691
KEGG: bbt:BBta_1514 putative response regulator receiver.
 
  
 0.877
Msil_2693
PFAM: type II secretion system protein; KEGG: bbt:BBta_1516 putative type II secretion system protein precursor.
 
  
 0.765
Msil_2694
PFAM: type II secretion system protein; KEGG: bbt:BBta_1517 hypothetical protein.
 
  
 0.750
Msil_2689
PFAM: peptidase A24A prepilin type IV; KEGG: bbt:BBta_1528 hypothetical protein.
  
  
 0.742
Msil_2685
PFAM: TadE family protein; KEGG: bbt:BBta_1523 hypothetical protein.
 
  
 0.724
Msil_2692
PFAM: type II secretion system protein E; KEGG: bbt:BBta_1515 secretory protein kinase, CpaF.
 
  
 0.706
Msil_2695
PFAM: type II and III secretion system protein; transport-associated; KEGG: bbt:BBta_1519 putative pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.703
Msil_2686
KEGG: bbt:BBta_1525 hypothetical protein.
  
  
 0.689
Msil_2688
PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: bja:blr3497 hypothetical protein.
       0.475
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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