STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msil_2726PFAM: glycosyl transferase family 2; KEGG: bid:Bind_0447 glycosyl transferase family 2. (395 aa)    
Predicted Functional Partners:
Msil_2322
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bid:Bind_3201 TPR repeat-containing protein.
 
 
 0.779
Msil_3058
KEGG: bid:Bind_2724 conserved hypothetical protein, putative phage associated protein.
 
  
 0.728
Msil_3055
KEGG: bid:Bind_2727 conserved hypothetical protein, putative phage associated protein.
  
     0.716
Msil_2725
Hypothetical protein; KEGG: sal:Sala_0623 CDP-alcohol phosphatidyltransferase.
 
     0.675
Msil_2382
PFAM: TPR repeat-containing protein; peptidase C14 caspase catalytic subunit p20; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: met:M446_6666 peptidase C14 caspase catalytic subunit P20.
 
   
 0.637
Msil_2343
KEGG: bid:Bind_3661 hypothetical protein.
  
     0.612
Msil_2735
PFAM: glycosyl transferase group 1; KEGG: met:M446_5389 glycosyl transferase group 1.
  
     0.592
Msil_1652
KEGG: bid:Bind_3661 hypothetical protein.
  
     0.584
Msil_0816
KEGG: xau:Xaut_3114 hypothetical protein.
  
    0.580
Msil_2700
Diguanylate cyclase/phosphodiesterase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: rpc:RPC_1464 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains).
  
  
 0.576
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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