Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_2777KEGG: ajs:Ajs_4247 hypothetical protein. (169 aa)    
Predicted Functional Partners:
Msil_0038
KEGG: bja:bll6861 chemotaxis protein.
  
 
 0.620
Msil_0068
KEGG: bid:Bind_3211 hypothetical protein.
  
 
 0.620
Msil_0921
KEGG: bid:Bind_0271 TolA protein.
  
 
 0.620
Msil_3754
PFAM: NHL repeat containing protein; KEGG: bbt:BBta_0470 hypothetical protein.
  
 
 0.620
Msil_3486
PFAM: cell cycle protein; KEGG: bid:Bind_0691 cell cycle protein; Belongs to the SEDS family.
   
   0.602
Msil_1315
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: pol:Bpro_1191 ATPase, E1-E2 type.
  
 
 0.539
Msil_0432
PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: mrd:Mrad2831_4968 peptidase S1 and S6 chymotrypsin/Hap.
  
 0.534
Msil_0611
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: sat:SYN_02760 Mg(2+) transport ATPase, P-type.
  
 
 0.524
Msil_2778
Hypothetical protein.
       0.465
Msil_0327
PFAM: cell divisionFtsK/SpoIIIE; KEGG: bid:Bind_0464 cell divisionFtsK/SpoIIIE.
  
 
 0.449
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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