Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_2806PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bid:Bind_3669 ABC transporter related. (257 aa)    
Predicted Functional Partners:
Msil_2807
PFAM: protein of unknown function DUF140; KEGG: bid:Bind_3668 protein of unknown function DUF140.
 
 0.999
Msil_2805
PFAM: Mammalian cell entry related domain protein; KEGG: bid:Bind_3670 mammalian cell entry related domain protein.
 0.998
Msil_2804
PFAM: protein of unknown function DUF330; KEGG: bid:Bind_3671 protein of unknown function DUF330.
 
    0.890
Msil_1448
KEGG: bid:Bind_3621 hypothetical protein.
   
 
 0.880
Msil_1397
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bid:Bind_3464 binding-protein-dependent transport systems inner membrane component.
 
      0.580
nuoA
NADH-ubiquinone/plastoquinone oxidoreductase chain 3; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.
   
    0.530
Msil_2808
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bid:Bind_3415 mandelate racemase/muconate lactonizing protein.
       0.508
Msil_0059
Molybdate ABC transporter, inner membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
 
    0.482
rpsI
PFAM: ribosomal protein S9; KEGG: bid:Bind_1379 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
     0.408
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.