Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Msil_2811PFAM: helix-hairpin-helix motif; KEGG: met:M446_5276 helix-hairpin-helix motif. (119 aa)    
Predicted Functional Partners:
Msil_0911
PFAM: type II secretion system protein; KEGG: rpc:RPC_3008 type II secretion system protein.
  
  
 0.747
Msil_0908
PFAM: peptidase A24A prepilin type IV; KEGG: rpc:RPC_3012 peptidase A24A, prepilin type IV; Belongs to the peptidase A24 family.
   
  
 0.732
Msil_0910
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: bja:bll6021 general secretion pathway protein E.
  
  
 0.707
Msil_2233
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
  
 0.587
Msil_1679
PFAM: ComEC/Rec2-related protein; KEGG: bid:Bind_1411 ComEC/Rec2-related protein.
  
  
 0.529
Msil_2812
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bid:Bind_0056 thioredoxin reductase.
       0.512
Msil_2971
KEGG: bid:Bind_1140 phosphoribosyltransferase.
  
  
 0.495
Msil_3857
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: bid:Bind_3421 DNA protecting protein DprA.
  
  
 0.476
Msil_2810
PFAM: phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: bid:Bind_3580 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II.
  
    0.464
Msil_0912
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: bra:BRADO6346 general secretion pathway protein G.
  
  
 0.447
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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