Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Msil_2829KEGG: bxe:Bxe_B0964 putative ABC phosphate/phosphonate transporter, periplasmic ligand binding protein. (271 aa)    
Predicted Functional Partners:
Msil_2828
PFAM: fatty acid desaturase; KEGG: bvi:Bcep1808_3902 fatty acid desaturase.
 
     0.946
Msil_1350
KEGG: bpl:BURPS1106A_A2411 hypothetical protein.
  
    0.585
Msil_1093
PFAM: DNA/RNA non-specific endonuclease; KEGG: bbt:BBta_5484 hypothetical protein; Belongs to the peptidase S1B family.
  
    0.522
Msil_1792
TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: azc:AZC_2290 putative Na+/phosphate symporter.
  
   
 0.508
Msil_3704
KEGG: nfa:nfa20300 hypothetical protein.
   
    0.472
Msil_3460
Nitrile hydratase, alpha subunit; KEGG: rle:pRL110124 putative cobalt-containing nitrile hydratase subunit alpha; TIGRFAM: nitrile hydratase, alpha subunit; PFAM: Nitrile hydratase alpha chain.
  
   
 0.471
Msil_2639
PFAM: Sarcosine oxidase gamma subunit; KEGG: rpb:RPB_1144 sarcosine oxidase, gamma subunit.
  
     0.435
Msil_2299
6-phosphatase; PFAM: Alkaline phosphatase; KEGG: mab:MAB_0087c alkaline phosphatase; Belongs to the alkaline phosphatase family.
   
  
 0.420
Msil_2699
KEGG: bac:BamMC406_3901 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
  
 0.414
Msil_2473
GAF sensor hybrid histidine kinase; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: met:M446_5171 GAF sensor hybrid histidine kinase.
     
 0.402
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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