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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msil_2829KEGG: bxe:Bxe_B0964 putative ABC phosphate/phosphonate transporter, periplasmic ligand binding protein. (271 aa)    
Predicted Functional Partners:
Msil_2828
PFAM: fatty acid desaturase; KEGG: bvi:Bcep1808_3902 fatty acid desaturase.
 
     0.937
Msil_1350
KEGG: bpl:BURPS1106A_A2411 hypothetical protein.
  
    0.603
Msil_1093
PFAM: DNA/RNA non-specific endonuclease; KEGG: bbt:BBta_5484 hypothetical protein; Belongs to the peptidase S1B family.
  
    0.538
Msil_3704
KEGG: nfa:nfa20300 hypothetical protein.
   
    0.495
Msil_1792
TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: azc:AZC_2290 putative Na+/phosphate symporter.
  
     0.484
Msil_2639
PFAM: Sarcosine oxidase gamma subunit; KEGG: rpb:RPB_1144 sarcosine oxidase, gamma subunit.
  
     0.435
Msil_3460
Nitrile hydratase, alpha subunit; KEGG: rle:pRL110124 putative cobalt-containing nitrile hydratase subunit alpha; TIGRFAM: nitrile hydratase, alpha subunit; PFAM: Nitrile hydratase alpha chain.
  
     0.415
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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