Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_2833PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_0307 ABC transporter related. (258 aa)    
Predicted Functional Partners:
Msil_2835
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_0309 binding-protein-dependent transport systems inner membrane component.
 
 
 0.920
Msil_2834
KEGG: rpb:RPB_0308 twin-arginine translocation pathway signal.
 
 
 0.860
Msil_2448
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mpo:Mpop_4265 binding-protein-dependent transport systems inner membrane component.
 
 
 0.758
Msil_3769
KEGG: mca:MCA0589 nitrate transporter, putative.
 
 0.732
Msil_0768
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bra:BRADO0532 putative sulfonate ABC transporter, permease protein (SsuC/YcbM-like).
 
 
 0.720
Msil_2672
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpt:Rpal_2687 binding-protein-dependent transport systems inner membrane component.
 
 
 0.684
Msil_0772
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_1398 probable permease of ABC transporter.
 
 
 0.639
Msil_2837
KEGG: rpb:RPB_0305 putative acyl-CoA dehydrogenase.
 
    0.627
Msil_2602
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_4398 putative ABC-type nitrate/sulfonate/bicarbonate transport permease.
 
 
 0.626
Msil_2836
PFAM: OsmC family protein; KEGG: rpb:RPB_0304 hypothetical protein.
 
     0.610
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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