Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
Msil_2901Hypothetical protein; KEGG: nwi:Nwi_1933 putative porin. (118 aa)    
Predicted Functional Partners:
Msil_2902
Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.571
Msil_2900
Scaffold protein Nfu/NifU; PFAM: nitrogen-fixing NifU domain protein; Scaffold protein Nfu/NifU; KEGG: bid:Bind_1051 scaffold protein Nfu/NifU.
       0.472
Msil_2898
PFAM: GCN5-related N-acetyltransferase; KEGG: bid:Bind_1053 GCN5-related N-acetyltransferase.
       0.406
Msil_2899
PFAM: peptidase M22 glycoprotease; KEGG: bid:Bind_1052 peptidase M22 glycoprotease.
       0.406
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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